IMP : a pipeline for reproducible integrated 1 metagenomic and metatranscriptomic analyses
نویسندگان
چکیده
20 We present IMP, an automated pipeline for reproducible integrated analyses of coupled 21 metagenomic and metatranscriptomic data. IMP incorporates preprocessing, iterative co22 assembly of metagenomic and metatranscriptomic data, analyses of microbial community 23 structure and function as well as genomic signature-based visualizations. Complementary use 24 of metagenomic and metatranscriptomic data improves assembly quality and enables the 25 estimation of both population abundance and community activity while allowing the recovery 26 and analysis of potentially important components, such as RNA viruses. IMP is containerized 27 using Docker which ensures reproducibility. IMP is available at http://r3lab.uni.lu/web/imp/. 28 29
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تاریخ انتشار 2016